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Frequently Asked Questions


CUSTOM ANTIBODY DEVELOPMENT


CUSTOM PEPTIDE SYNTHESIS
GENERAL TIPS

Custom Antibody Development

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Should I use a polyclonal antibody or a monoclonal antibody?

This will depend upon the specific applications and requirements of your experiments.

Polyclonal antibodies will recognize multiple epitopes of an antigen. They are also more likely to maintain recognition of antigenic epitopes even when modest changes in conformation or aggregation occur. Polyclonal antibodies are also capable of recognizing different epitopes with different affinities. Because of this ability, polyclonal antibodies have a broader range of potential applications than monoclonal antibodies.

Monoclonal antibodies recognize only one epitope of the antigen and are highly specific to that particular antigen. They generally yield much lower background because of this specificity. Monoclonal antibodies also are highly homogenous and allow for unlimited production with sustained specificity.

What kind of antigens do you use to make antibodies?

Abgent's immunization protocols can be adapted for native proteins, recombinant proteins, and peptides. If the synthetic peptide is smaller than 8 kDa, we conjugate the peptide to KLH through the sulfo bond on amino acid cysteine. Antigens harmful to human health are not accepted.

Do tags interfere with antibody production?

Usually GST (Glutathione S-transferse) and MBP (maltos-binding protein) tags are immunogenic simply because they are large proteins that contain many epitopes. It is preferable to use antigen proteins without GST or MBP tags. However, other small tags, such as His-tag, Myc-tag and FLAG-tags, do not interfere with specific antibody production.

Can you help me design a good peptide sequence for my antigen?

Our technical staff is highly experienced in antibody development and production, and we are pleased to consult with you on peptide design at no additional charge.

Please see our peptide design tips (hyperlink) for general design guidelines. Peptide sequence is crucial to creating an antibody that will specifically recognize native proteins with high affinity. We usually use peptides that are 8 to 15 amino acids in length.

How much antigen is required for antibody development?

If the antigen is a peptide, 10 mg will generally be sufficient. Less may be needed if your peptide is highly purified. For affinity purification of an antibody, we will need an additional 5 mg of peptide, preferably in dry form.

If the antigen is a protein, 2-5 mgs at a concentration of 0.5-1 mg/mL is generally sufficient. Be sure to let us know which buffer you included and the protein concentration. We recommend 3-5 mg at a concentration of 0.5 mg/ml or greater. For affinity purification of an antibody, 5 mg of soluble protein is required to prepare the immunoaffinity column.

This applies to both monoclonal and polyclonal antibody development.

Can you help in the preparation of antigen?

Abgent offers a wide variety of custom services, including peptide synthesis and conjugation, as well as gene cloning and protein expression/purification using expression systems of either bacteria or baculovirus.

How should the sample be prepared?

Abgent accepts either peptides or proteins for antibody development. Avoid additives that are toxic to animals, e.g. protease inhibitors such as PMSF, sodium azide etc. Peptides should be in dry form unless it is conjugated with a carrier protein (such as KLH or BSA). In such cases, the peptides should be in a buffered solution (no ionic detergents) with a concentration of at least 1 mg/mL. Proteins should be provided in buffer solutions (no ionic detergents), as a lyophilizate, or as a polyacrylamide gel slice. Destain gel in water to remove acids that can contribute to further denaturation of the protein.

How should I send the antigen to you?

Send samples overnight in a conical tube with an ice pack. Do not freeze samples, as this will interfere with the process.

What species of animals do you use to develop antibodies?

Our custom monoclonal antibody development is performed in BALB/c mice, and polyclonal antibodies are produced in New Zealand rabbits.

How do you measure the antibody titer?

Antibody titer is determined by ELISA. In this method, we coat 96-well plates with antigen and wash repeatedly to remove unbound antigen. When a KLH-conjugated peptide is the immunogen, we use unconjugated free peptides as a test antigen in ELISA. Serial dilutions of antibody are added to the antigen-bound wells and washed repeatedly to remove unbound antibodies. A labeled secondary antibody is then added and the number of bound primary antibodies is determined by colorimetric assay.

How do you test antibodies that you have developed?

All of Abgent's antibodies have been extensively tested by ELISA and western blot. We can test antibodies in other assays, like immunoprecipitation, flow cytometry, and immunohistochemistry, upon customer request.

How are Abgent's antibodies supplied?

Purified antibodies are supplied in PBS with a low level of preservatives. The composition of PBS is 137mM NaCl, 2.7mM KCl, 10mM Na2HPO4, 2mM KH2PO4 at PH7.2. Anti-sera are supplied in original liquid form without preservatives. Antibodies can be stored at -80 o C for several years. Multiple freezing and thawing can denature protein, therefore, aliquoting for single use is highly recommended.

How long does a project take?

For details on project steps, project time periods and costs, please click on the following link: Antibody Development

Custom Peptide Synthesis top
How should I start an order for custom peptide synthesis?

You will need to provide us with a sequence of your peptide. We will evaluate it to see if it meets our requirements. See Peptide Order Form .

Can you help me design a good peptide sequence?

Our technical staff is highly experienced in antibody development and production, and we are pleased to consult with you on peptide design at no additional charge.

What chemistry do you use to produce synthetic peptides?

We employ Fmoc-solid phase peptide synthesis.

How are peptides supplied?

Abgent supplies all peptides as lyophilized powders. The lyophilized product should be stored at -20 o C to maintain maximum stability for the long term. Before use, let the container and its contents warm to room temperature in a desiccator to avoid absorption of water. Storage at 4 o C is acceptable for short-term convenient stock. Once you reconstitute the peptide, in solution slow degradation reactions may take place over the long term, such as oxidation of Cys, Met, and Trp, as well as deamidation of Gln. In addition, cysteines can form intra and intermolecular disulfide bonds.

How do you purify your peptides?

Abgent offers peptides purified by reverse phase HPLC chromatography. Please specify the level of purity needed on the custom peptide synthesis order form.

Can you help me design a good peptide sequence?

Our technical staff is highly experienced in antibody development and production, and we are pleased to consult with you on peptide design at no additional charge. Please contact us at tech@abgent.com .

 

General Peptide Design Tips top

Peptide sequence is crucial to creating an antibody that will specifically recognize native proteins with high affinity. We usually use peptides that are 12 to 20 amino acids in length.

The chemical, physical, and structural properties of a peptide depend on its unique amino acid sequence and composition. For this reason, peptide sequences can be challenging to synthesize, purify, and/or solubilize. In general, peptide sequences that are rich in hydrophobic amino acids can be difficult to dissolve in aqueous solutions, and may be unsuitable for use in biological systems. The following tips will be useful in modifying your peptide sequence to assist in solubility, synthesis, and/or purification:

  • Minimize difficult amino acids such as multiple Cys, Met, Arg, or Trp in the sequence.
  • Minimize hydrophobic amino acids or break up a string of hydrophobic amino acids with a polar amino acid.
  • Avoid N-terminal glutamic acid so that it cannot cyclize to form pyroglutamine.
  • A single antigenic determinant (i.e. the smallest immunogenic peptide) could be between 5 and 8 amino acids. However, longer peptides have a greater conformational similarity to the native protein and are therefore more likely to induce antibodies that recognize the natural protein. Since at least one epitope is recommended, ideal peptides are 12-20 amino acids in length.
  • The peptide sequence must be selected from an accessible region of the protein. The trans-membrane region of a protein is not usually exposed and should thus be avoided. Similarly, any region that undergoes post-translational modification (e.g. glycosylation), should also be avoided, since antibodies raised against this sequence may not recognize the modified native protein.
  • Synthetic peptides should be able to adopt a conformation that mimics its structure within the protein.
  • Multiple glutamines should be avoided, since they may cause insolubility by forming hydrogen bonds between the peptides.
  • A single cysteine in the selected sequence is useful for conjugation to a carrier protein. The cysteine should be at the N or C terminus for optimal conjugation. An inter- or intra- peptide disulphide bonds may be formed due to the presence of additional cysteine residue in the sequence, thus leading to insolubility and structural alteration of the peptide.
  • Proline and tyrosine residues enhance the immunogenicity of a peptide as they induce conformational change of peptide that mimics the native structure. One or more proline, arginine and histidine in the middle of the sequence will greatly reduce peptide aggregation during synthesis.
 

 



 
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  Email: tech@abgent.com
  Phone:
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